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P083 - GCB 2006 - German Conference on Bioinformatics 2006

https://dl.gi.de/handle/20.500.12116/24199
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Auflistung P083 - GCB 2006 - German Conference on Bioinformatics 2006 nach Autor:in "Hamborg, Thomas"

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  • Konferenzbeitrag
    MPI-ClustDB: A fast string matching strategy utilizing parallel computing
    (German Conference on Bioinformatics, 2006) Hamborg, Thomas; Kleffe, Jürgen
    ClustDB is a tool for the identification of perfect matches in large sets of sequences. It is faster and can handle at least 8 times more data than VMATCH, the most memory efficient exact program currently available. Still ClustDB needs about four hours to compare all Human ESTs. We therefore present a distributed and parallel implementation of ClustDB to reduce the execution time. It uses a message-passing library called MPI and runs on distributed workstation clusters with significant runtime savings. MPI-ClustDB is written in ANSI C and freely available on request from the authors.