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German Conference on Bioinformatics

https://dl.gi.de/handle/20.500.12116/21203
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Auflistung German Conference on Bioinformatics nach Autor:in "Abouelhoda, Mohamed I."

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  • Konferenzbeitrag
    Efficient mapping of large cDNA/EST databases to genomes: A comparison of two different strategies
    (German Conference on Bioinformatics 2005 (GCB 2005), 2005) Wawra, Christian; Abouelhoda, Mohamed I.; Ohlebusch, Enno
    This paper presents a comparison of two strategies for cDNA/EST mapping: The seed-and-extend strategy and the fragment-chaining strategy. We derive theoretical results on the statistics of fragments of type maximal exact match. Moreover, we present efficient fragment-chaining algorithms that are simpler than previous ones. In experiments, we compared our implementation of the fragment-chaining strategy with the seed-and-extend strategy implemented in the software tool BLAT.