(German Conference on Bioinformatics 2010, 2010) Gogol-Döring, Andreas; Chen, Wei
The main challenge when analyzing ChIP-Seq data is the identification of DNA-protein binding sites by finding genomic regions that are enriched with sequencing reads. We present a new tool called qips especially suited for processing ChIP-Seq data containing broader enriched regions. Our tool certainly finds all enriched regions that are not exceeded by higher significant alternatives.
