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Finding optimal sets of enriched regions in chip-seq data
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Datum
2010
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Gesellschaft für Informatik e.V.
Zusammenfassung
The main challenge when analyzing ChIP-Seq data is the identification of DNA-protein binding sites by finding genomic regions that are enriched with sequencing reads. We present a new tool called qips especially suited for processing ChIP-Seq data containing broader enriched regions. Our tool certainly finds all enriched regions that are not exceeded by higher significant alternatives.