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dc.contributor.authorMosig, Axel
dc.contributor.authorHofacker, Ivo L.
dc.contributor.authorStadler, Peter F.
dc.contributor.editorHuson, Daniel
dc.contributor.editorKohlbacher, Oliver
dc.contributor.editorLupas, Andrei
dc.contributor.editorNieselt, Kay
dc.contributor.editorZell, Andreas
dc.date.accessioned2019-08-12T13:06:14Z
dc.date.available2019-08-12T13:06:14Z
dc.date.issued2006
dc.identifier.isbn978-3-88579-177-5
dc.identifier.issn1617-5468
dc.identifier.urihttp://dl.gi.de/handle/20.500.12116/24202
dc.description.abstractThe analysis of small circular sequences requires specialized tools. While the differences between linear and circular sequences can be neglected in the case of long molecules such as bacterial genomes since in practice all analysis is performed in sequence windows, this is not true for viroids and related sequences which are usually only a few hundred basepairs long. In this contribution we present basic algorithms and corresponding software for circular RNAs. In particular, we discuss the problem of pairwise and multiple cyclic sequence alignments with affine gap costs, and an extension of a recent approach to circular RNA folding to the computation of consensus structures.en
dc.language.isoen
dc.publisherGesellschaft für Informatik e.V.
dc.relation.ispartofGerman Conference on Bioinformatics
dc.relation.ispartofseriesLecture Notes in Informatics (LNI) - Proceedings, Volume P-83
dc.subjectRNA secondary structure
dc.subjectcircular RNA
dc.subjectdynamic programming
dc.subjectviroids
dc.titleComparative analysis of cyclic sequences: Viroids and other small circular RNAsen
dc.typeText/Conference Paper
dc.pubPlaceBonn
mci.reference.pages93-102
mci.conference.sessiontitleRegular Research Papers
mci.conference.locationTübingen
mci.conference.dateSeptember 19-22, 2006


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