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  • P235 - GCB 2014 - German Conference on Bioinformatics 2014
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Interactive and dynamic web-based visual exploration of high dimensional bioimages with real time clustering

Author:
Rathke, Magnus [DBLP] ;
Kölling, Jan [DBLP] ;
Nattkemper, Tim W. [DBLP]
Abstract
Web browsers and web applications have become common tools in bioinformatics over the past decades. Many existing web applications revolve around server-client interaction, where heavy computational tasks are often outsourced to the server and the presentation is handled on the the client-side. However more recent additions to the web browser technology embrace the capability of handling more complex operations on the client-side itself, cutting out most of the server-client interaction except for data loading. This paper contributes to the exploration of the potential of approaches to implement and speed up computational expensive tasks, like image cluster analysis, within a client-side web browser environment. The experimental results, incorporating the well known k-means algorithm which serves as a platform for various parallelization approaches, indicate the possibility to achieve real time image clustering. Especially for the available MALDI-MSI data set the results look promising. Despite good results of multithreading approaches, algorithmic approaches appear to be relevant too. Therefore advancements in accelerating the k-means algorithm itself are considered.
  • Citation
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Rathke, M., Kölling, J. & Nattkemper, T. W., (2014). Interactive and dynamic web-based visual exploration of high dimensional bioimages with real time clustering. In: Giegerich, R., Hofestädt, R. & Nattkemper, T. W. (Hrsg.), German conference on bioinformatics 2014. Bonn: Gesellschaft für Informatik e.V.. (S. 44-53).
@inproceedings{mci/Rathke2014,
author = {Rathke, Magnus AND Kölling, Jan AND Nattkemper, Tim W.},
title = {Interactive and dynamic web-based visual exploration of high dimensional bioimages with real time clustering},
booktitle = {German conference on bioinformatics 2014},
year = {2014},
editor = {Giegerich, Robert AND Hofestädt, Ralf AND Nattkemper, Tim W.} ,
pages = { 44-53 },
publisher = {Gesellschaft für Informatik e.V.},
address = {Bonn}
}
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More Info

ISBN: 978-3-88579-629-9
ISSN: 1617-5468
xmlui.MetaDataDisplay.field.date: 2014
Language: en (en)
Content Type: Text/Conference Paper
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  • P235 - GCB 2014 - German Conference on Bioinformatics 2014 [13]

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Gesellschaft für Informatik e.V. (GI), Kontakt: Geschäftsstelle der GI
Diese Digital Library basiert auf DSpace.