Logo des Repositoriums
 
Konferenzbeitrag

Extracting reproducible simulation studies from model repositories using the combinearchive toolkit

Lade...
Vorschaubild

Volltext URI

Dokumententyp

Text/Conference Paper

Zusatzinformation

Datum

2015

Zeitschriftentitel

ISSN der Zeitschrift

Bandtitel

Verlag

Gesellschaft für Informatik e.V.

Zusammenfassung

The COMBINE archive is a digital container format for files related to a virtual experiment in computational biology. It eases the management of numerous files related to a simulation study, fosters collaboration, and ultimately enables the exchange of reproducible research results. The CombineArchive Toolkit is a software for creating, exploring, modifying, and sharing COMBINE archives. Open model repositories such as BioModels Database are a valuable resource of models and associated simulation descriptions. However, so far no tool exists to export COMBINE archives for a given simulation study from such databases. Here we demonstrate how the CombineArchive Toolkit can be used to extract reproducible simulation studies from model repositories. We use the example of Masymos, a graph database with a sophisticated link concept to connect model-related files on the storage layer.

Beschreibung

Scharm, Martin; Waltemath, Dagmar (2015): Extracting reproducible simulation studies from model repositories using the combinearchive toolkit. Datenbanksysteme für Business, Technologie und Web (BTW 2015) - Workshopband. Bonn: Gesellschaft für Informatik e.V.. PISSN: 1617-5468. ISBN: 978-3-88579-636-7. pp. 137-142. Hamburg. 2.-3. März 2015

Schlagwörter

Zitierform

DOI

Tags